PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_9EB8DE389.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 217aa    MW: 25708.1 Da    PI: 8.2256
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_9EB8DE389.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.95.9e-2228122191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                            +fYn+Y+ e GF+vr+s+ +    n +i+ r+fv s+eg ree+++k   ++++r +r+ tr+gCkakl+  +++ +g+w v+++  e
  Traes_5BL_9EB8DE389.1  28 RFYNNYGLEKGFDVRRSYVEWDGSNCHIILRKFVYSREGGREEKRTKrkmEDRKRMPRSITRVGCKAKLVFARQEeTGRWFVKDFIDE 115
                            5**************************************99999888777788888***************99999************ PP

                   FAR1  85 HnHelap 91 
                            HnH+lap
  Traes_5BL_9EB8DE389.1 116 HNHPLAP 122
                            ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1928122IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MADISHESML EYYHIANKMF HSEDEGYRFY NNYGLEKGFD VRRSYVEWDG SNCHIILRKF  60
VYSREGGREE KRTKRKMEDR KRMPRSITRV GCKAKLVFAR QEETGRWFVK DFIDEHNHPL  120
APRDLSCLLR SQRKISDEQK ADIADMEKSG IRKHHIMNIL CMQYGGYDEV GCTTRDIYNF  180
FHANKQESIV SGDAQTVINH MVAWRERDSD LFLHVLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231784.25e-97PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_014751141.17e-99PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5FFM31e-164W5FFM3_WHEAT; Uncharacterized protein
STRINGBRADI2G37795.11e-96(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-27FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]